API Reference
=============

This section provides comprehensive API documentation for all modules in elsheeto.

Facade Functions
----------------

The facade module provides convenient functions for parsing sample sheets without dealing with the internal parsing stages.

.. automodule:: elsheeto.facade
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Models
------

Data Models - Common
~~~~~~~~~~~~~~~~~~~~

.. automodule:: elsheeto.models.common
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Data Models - Utils
~~~~~~~~~~~~~~~~~~~~

.. automodule:: elsheeto.models.utils
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Data Models - Stage 1 (Raw CSV)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

.. automodule:: elsheeto.models.csv_stage1
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Data Models - Stage 2 (Structured)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

.. automodule:: elsheeto.models.csv_stage2
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Data Models - Illumina v1
~~~~~~~~~~~~~~~~~~~~~~~~~

.. automodule:: elsheeto.models.illumina_v1
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Data Models - Aviti
~~~~~~~~~~~~~~~~~~~

.. automodule:: elsheeto.models.aviti
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Parsers
-------

Parser - Common
~~~~~~~~~~~~~~~

.. automodule:: elsheeto.parser.common
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Parser - Stage 1 (Raw CSV)
~~~~~~~~~~~~~~~~~~~~~~~~~~

.. automodule:: elsheeto.parser.stage1
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Parser - Stage 2 (Structured)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

.. automodule:: elsheeto.parser.stage2
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Parser - Illumina v1
~~~~~~~~~~~~~~~~~~~~

.. automodule:: elsheeto.parser.illumina_v1
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Parser - Aviti
~~~~~~~~~~~~~~

.. automodule:: elsheeto.parser.aviti
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Exceptions
----------

.. automodule:: elsheeto.exceptions
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